STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED13750.1Transcriptional regulator, ArsR family. (247 aa)    
Predicted Functional Partners:
SED13863.1
Heme-degrading monooxygenase HmoA.
 
     0.903
SED13800.1
NIPSNAP protein.
 
     0.901
SEC98560.1
NIPSNAP protein.
 
     0.776
SEB95177.1
Hypothetical protein.
  
     0.480
SEC41050.1
Copper chaperone CopZ.
  
  
 0.480
SED62775.1
Cu+-exporting ATPase.
  
  
 0.480
SEC76650.1
Heme-binding protein A (HasA).
  
     0.466
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.