STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED18015.1Acyltransferase. (110 aa)    
Predicted Functional Partners:
SEC48951.1
Predicted arabinose efflux permease, MFS family.
     
 0.671
mutM
DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.652
SEC44114.1
TIGR02099 family protein.
      
 0.610
SEC60614.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
  
 0.488
SED57729.1
Amino acid adenylation domain-containing protein.
  
 0.450
SED90210.1
PAS domain S-box-containing protein.
  
 
 0.446
SED17894.1
HD-like signal output (HDOD) domain, no enzymatic activity.
       0.424
SED93819.1
Hypothetical protein.
 
  0.419
SED77710.1
Alpha/beta hydrolase family protein.
 
  0.416
SEE08163.1
NTE family protein.
    
  0.403
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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