STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED23431.1Collagenase. (689 aa)    
Predicted Functional Partners:
SEC96091.1
Serine protease.
 
 0.803
SEC46126.1
Pseudolysin; Extracellular zinc metalloprotease.
 
 
 0.797
SEE14391.1
DNA translocase FtsK.
    
 
 0.774
SED23375.1
Hypothetical protein.
      
0.773
SEC96036.1
Chitin-binding protein.
  
   
 0.758
SEC20711.1
D-glucuronyl C5-epimerase C-terminus.
    
 
 0.741
SED40441.1
Hypothetical protein.
    
  0.721
SEC63845.1
Zinc carboxypeptidase.
  
 
 0.711
SED64088.1
Exo-beta-1,3-glucanase, GH17 family.
    
 0.709
SEC71138.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
  
     0.691
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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