SED23897.1 protein (Pseudomonas anguilliseptica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pseudomonas anguilliseptica

NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEB90620.1	SEC24975.1	SAMN05421553_0003	SAMN05421553_0561	Polar amino acid transport system substrate-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.773
SEB90620.1	SEC34394.1	SAMN05421553_0003	SAMN05421553_0705	Polar amino acid transport system substrate-binding protein.	Extracellular solute-binding protein, family 3.	0.774
SEB90620.1	SEC60614.1	SAMN05421553_0003	SAMN05421553_1135	Polar amino acid transport system substrate-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.891
SEB90620.1	SEC93290.1	SAMN05421553_0003	SAMN05421553_1701	Polar amino acid transport system substrate-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.719
SEB90620.1	SED23897.1	SAMN05421553_0003	SAMN05421553_2292	Polar amino acid transport system substrate-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.768
SEB90620.1	SED31721.1	SAMN05421553_0003	SAMN05421553_2443	Polar amino acid transport system substrate-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.773
SEB90620.1	SED63719.1	SAMN05421553_0003	SAMN05421553_3022	Polar amino acid transport system substrate-binding protein.	Polar amino acid transport system substrate-binding protein.	0.765
SEB90620.1	SED71018.1	SAMN05421553_0003	SAMN05421553_3168	Polar amino acid transport system substrate-binding protein.	Polar amino acid transport system substrate-binding protein.	0.774
SEC04526.1	SEC24975.1	SAMN05421553_0226	SAMN05421553_0561	Polar amino acid transport system substrate-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.773
SEC04526.1	SEC34394.1	SAMN05421553_0226	SAMN05421553_0705	Polar amino acid transport system substrate-binding protein.	Extracellular solute-binding protein, family 3.	0.774
SEC04526.1	SEC60614.1	SAMN05421553_0226	SAMN05421553_1135	Polar amino acid transport system substrate-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.891
SEC04526.1	SEC93290.1	SAMN05421553_0226	SAMN05421553_1701	Polar amino acid transport system substrate-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.719
SEC04526.1	SED23897.1	SAMN05421553_0226	SAMN05421553_2292	Polar amino acid transport system substrate-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.768
SEC04526.1	SED31721.1	SAMN05421553_0226	SAMN05421553_2443	Polar amino acid transport system substrate-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.773
SEC04526.1	SED63719.1	SAMN05421553_0226	SAMN05421553_3022	Polar amino acid transport system substrate-binding protein.	Polar amino acid transport system substrate-binding protein.	0.765
SEC04526.1	SED71018.1	SAMN05421553_0226	SAMN05421553_3168	Polar amino acid transport system substrate-binding protein.	Polar amino acid transport system substrate-binding protein.	0.774
SEC24975.1	SEB90620.1	SAMN05421553_0561	SAMN05421553_0003	Amino acid ABC transporter substrate-binding protein, PAAT family.	Polar amino acid transport system substrate-binding protein.	0.773
SEC24975.1	SEC04526.1	SAMN05421553_0561	SAMN05421553_0226	Amino acid ABC transporter substrate-binding protein, PAAT family.	Polar amino acid transport system substrate-binding protein.	0.773
SEC24975.1	SEC60614.1	SAMN05421553_0561	SAMN05421553_1135	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.896
SEC24975.1	SEC93290.1	SAMN05421553_0561	SAMN05421553_1701	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.735