SED23953.1 protein (Pseudomonas anguilliseptica)

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Score

SED23953.1

GreA/GreB family elongation factor. (160 aa)

Predicted Functional Partners:

SED24004.1

0.875

rpoZ

0.815

rpoC

0.807

rpoB

0.767

rpoA

0.759

SED24042.1

0.512

rpsO

0.503

SED95521.1

0.475

pnp

0.453

Your Current Organism:

Pseudomonas anguilliseptica

NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SED23953.1	SED24004.1	SAMN05421553_2293	SAMN05421553_2294	GreA/GreB family elongation factor.	TIGR01666 family membrane protein.	0.875
SED23953.1	SED24042.1	SAMN05421553_2293	SAMN05421553_2295	GreA/GreB family elongation factor.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.512
SED23953.1	SED95521.1	SAMN05421553_2293	SAMN05421553_3718	GreA/GreB family elongation factor.	Conserved hypothetical protein, PP_1857 family.	0.475
SED23953.1	pnp	SAMN05421553_2293	SAMN05421553_0485	GreA/GreB family elongation factor.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.453
SED23953.1	rpoA	SAMN05421553_2293	SAMN05421553_0941	GreA/GreB family elongation factor.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.759
SED23953.1	rpoB	SAMN05421553_2293	SAMN05421553_0975	GreA/GreB family elongation factor.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.767
SED23953.1	rpoC	SAMN05421553_2293	SAMN05421553_0974	GreA/GreB family elongation factor.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.807
SED23953.1	rpoZ	SAMN05421553_2293	SAMN05421553_1968	GreA/GreB family elongation factor.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.815
SED23953.1	rpsO	SAMN05421553_2293	SAMN05421553_0486	GreA/GreB family elongation factor.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.503
SED24004.1	SED23953.1	SAMN05421553_2294	SAMN05421553_2293	TIGR01666 family membrane protein.	GreA/GreB family elongation factor.	0.875
SED24004.1	SED24042.1	SAMN05421553_2294	SAMN05421553_2295	TIGR01666 family membrane protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.512
SED24042.1	SED23953.1	SAMN05421553_2295	SAMN05421553_2293	Amino acid ABC transporter substrate-binding protein, PAAT family.	GreA/GreB family elongation factor.	0.512
SED24042.1	SED24004.1	SAMN05421553_2295	SAMN05421553_2294	Amino acid ABC transporter substrate-binding protein, PAAT family.	TIGR01666 family membrane protein.	0.512
SED95521.1	SED23953.1	SAMN05421553_3718	SAMN05421553_2293	Conserved hypothetical protein, PP_1857 family.	GreA/GreB family elongation factor.	0.475
pnp	SED23953.1	SAMN05421553_0485	SAMN05421553_2293	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	GreA/GreB family elongation factor.	0.453
pnp	rpoA	SAMN05421553_0485	SAMN05421553_0941	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.930
pnp	rpoB	SAMN05421553_0485	SAMN05421553_0975	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.904
pnp	rpoC	SAMN05421553_0485	SAMN05421553_0974	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.651
pnp	rpsO	SAMN05421553_0485	SAMN05421553_0486	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.851
rpoA	SED23953.1	SAMN05421553_0941	SAMN05421553_2293	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	GreA/GreB family elongation factor.	0.759