STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SED30768.1Protein of unknown function. (583 aa)    
Predicted Functional Partners:
SED30831.1
Protein of unknown function.
 
    0.962
SED56501.1
Protein of unknown function; Non-canonical start codon; manually curated.
 
    0.888
SED82742.1
Protein of unknown function.
 
    0.888
SED19512.1
Protein of unknown function.
 
    0.886
SED82784.1
Uncharacterized protein.
 
    0.859
SED82825.1
Hypothetical protein.
 
    0.790
SED68158.1
Uncharacterized membrane protein YckC, RDD family.
      
 0.588
SED30887.1
ATP-, maltotriose-and DNA-dependent transcriptional regulator MalT.
 
    0.525
SED76998.1
Phospholipid-binding lipoprotein MlaA.
    
   0.509
SED77066.1
Hypothetical protein.
    
   0.509
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.