STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED54446.1Hypothetical protein. (353 aa)    
Predicted Functional Partners:
SED54500.1
CxxC motif-containing protein, DUF1111 family.
 
  
 0.993
SED54398.1
Hypothetical protein.
 
  
 0.992
SED54551.1
Putative iron-regulated protein.
 
    0.959
SED61228.1
Arc-like DNA binding domain-containing protein.
  
     0.688
SEC28363.1
Alginate biosynthesis protein AlgK.
  
    0.620
SEC28592.1
Alginate biosynthesis protein AlgX.
  
     0.601
SED54234.1
Multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.600
SEC28520.1
poly(beta-D-mannuronate) C5 epimerase.
  
     0.599
SED54339.1
Methyl-accepting chemotaxis protein.
       0.581
algL
poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism; Belongs to the polysaccharide lyase 5 family.
  
     0.542
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.