Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SED74091.1Protein of unknown function. (229 aa)    
Predicted Functional Partners:
SED73993.1
Transcriptional regulator, Middle operon regulator (Mor) family.
 
     0.923
SED74042.1
Mu-like prophage protein gp16.
 
     0.881
SED74137.1
Protein of unknown function.
 
    0.865
SED50323.1
Hypothetical protein.
  
     0.728
SED79027.1
Hypothetical protein.
  
     0.728
SED75941.1
Hypothetical protein.
  
     0.723
SED48127.1
Transcriptional regulator, Middle operon regulator (Mor) family.
 
     0.722
SED80843.1
Transcriptional regulator, Middle operon regulator (Mor) family.
 
     0.721
SED50579.1
Phage protein U.
  
     0.713
SED76258.1
Phage protein U.
  
     0.711
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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