STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED74483.1Hypothetical protein. (159 aa)    
Predicted Functional Partners:
SED74345.1
Integrase core domain-containing protein.
 
     0.933
SED74288.1
Type II secretory pathway, component ExeA (predicted ATPase).
 
     0.930
SED74440.1
Hypothetical protein.
       0.778
SED48660.1
Integrase core domain-containing protein.
 
     0.775
SED80456.1
Integrase core domain-containing protein.
 
     0.774
SED73993.1
Transcriptional regulator, Middle operon regulator (Mor) family.
 
     0.769
SED48612.1
Type II secretory pathway, component ExeA (predicted ATPase).
 
     0.763
SED80843.1
Transcriptional regulator, Middle operon regulator (Mor) family.
 
     0.763
SED74389.1
Hypothetical protein.
       0.762
SED80502.1
Type II secretion system protein A.
 
     0.762
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.