Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SED81884.1General secretion pathway protein J. (231 aa)    
Predicted Functional Partners:
SED81844.1
General secretion pathway protein I.
 
 0.999
SED81937.1
General secretion pathway protein K.
 
 
 0.999
SED81743.1
General secretion pathway protein G.
 
 0.997
SED81793.1
General secretion pathway protein H.
 
 0.997
SED81985.1
Type II secretion system protein L (GspL); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.984
SED82030.1
General secretion pathway protein M.
 
  
 0.956
SED81702.1
General secretion pathway protein F.
 
  
 0.948
SED81563.1
General secretion pathway protein D.
 
  
 0.930
SED19801.1
General secretion pathway protein D.
 
  
 0.893
SED43686.1
Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.
  
 0.842
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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