Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SED90286.1Two-component system, repressor protein LuxO. (460 aa)    
Predicted Functional Partners:
SED90210.1
PAS domain S-box-containing protein.
 
 0.966
SEC43544.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
 
 0.909
SEC60614.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
  
 0.867
SEC56678.1
Two-component system, NtrC family, response regulator GlrR.
  
  
  0.838
SEC31679.1
Two-component system, unclassified family, sensor histidine kinase and response regulator.
  
 0.830
SEE76479.1
PAS domain S-box-containing protein.
  
 0.829
SED12059.1
PAS domain S-box-containing protein.
   
 0.814
SED93616.1
Na+/proline symporter.
  
 0.792
SEC26038.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
 0.780
SED02496.1
PAS/PAC sensor signal transduction histidine kinase.
 
 0.765
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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