STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE22997.1Hypothetical protein. (170 aa)    
Predicted Functional Partners:
SEE40375.1
Peptidoglycan-binding protein, CsiV.
 
     0.689
SED44684.1
AmpE protein.
  
     0.687
SEC04920.1
Hypothetical protein.
  
    0.683
SEC28592.1
Alginate biosynthesis protein AlgX.
  
     0.661
algL
poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism; Belongs to the polysaccharide lyase 5 family.
  
     0.651
SEC28520.1
poly(beta-D-mannuronate) C5 epimerase.
  
     0.614
SEE77716.1
Flagella basal body P-ring formation protein FlgA; Manually curated.
      
 0.610
SED00945.1
Alginate biosynthesis protein AlgX.
  
     0.604
SED00996.1
poly(beta-D-mannuronate) lyase.
  
     0.591
SED61228.1
Arc-like DNA binding domain-containing protein.
  
     0.589
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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