STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE26084.1T1SS-143 domain-containing protein/type I secretion C-terminal target domain (VC_A0849 subclass). (5791 aa)    
Predicted Functional Partners:
SEE73744.1
Outer membrane protein, adhesin transport system.
 
 
 0.807
SEE26143.1
Outer membrane protein, adhesin transport system.
 
 
 0.806
SEE26200.1
ATP-binding cassette, subfamily C, LapB.
 
  
 0.795
SEE26244.1
Membrane fusion protein, adhesin transport system.
 
  
 0.777
SEE73782.1
Membrane fusion protein, adhesin transport system.
 
  
 0.774
SED84066.1
Hemolysin D.
 
  
 0.731
SEE45932.1
Predicted transglutaminase-like cysteine proteinase.
  
   
 0.724
SEE75419.1
Transglutaminase-like cysteine proteinase BTLCP.
  
     0.709
SEE14391.1
DNA translocase FtsK.
    
 
 0.686
SEC76497.1
Membrane fusion protein, protease secretion system.
 
  
 0.666
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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