STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE30237.1Transcriptional regulator, AraC family. (332 aa)    
Predicted Functional Partners:
SED25187.1
Glutamate synthase (NADPH) large subunit.
    
 0.674
SEC92130.1
Arabinose-binding domain of AraC transcription regulator, N-term.
  
    0.625
SEE30187.1
acyl-CoA dehydrogenase.
       0.586
SEE32537.1
Hypothetical protein.
  
     0.510
SEE30123.1
Hypothetical protein.
       0.474
SED56803.1
Hypothetical protein.
  
     0.455
SEE03588.1
Hypothetical protein.
  
     0.451
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.450
SEE30070.1
Long-chain acyl-CoA synthetase.
       0.435
SED94993.1
Short chain enoyl-CoA hydratase.
  
   
 0.425
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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