STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE31141.1Putative spermidine/putrescine transport system permease protein. (280 aa)    
Predicted Functional Partners:
SEE31183.1
Putative spermidine/putrescine transport system permease protein.
 
 0.999
SEE31233.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.995
SEE31069.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
 
 0.986
SED17669.1
Putative spermidine/putrescine transport system permease protein.
 
 
 0.908
SED17730.1
Putative spermidine/putrescine transport system permease protein.
  
  
  0.892
SED17778.1
Putative spermidine/putrescine transport system substrate-binding protein.
  
  
  0.888
SEE31295.1
HAD-superfamily subfamily IB hydrolase, TIGR01490.
       0.795
SEE47264.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.605
SEC94946.1
Putrescine transport system permease protein.
  
 
 0.596
SEC94900.1
Putrescine transport system permease protein.
     
  0.526
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.