STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE35557.1Hypothetical protein. (136 aa)    
Predicted Functional Partners:
SEE08044.1
Protein of unknown function.
  
     0.771
SED90623.1
Uncharacterized membrane protein.
  
     0.754
SEE40682.1
Hypothetical protein.
  
     0.749
SEC44114.1
TIGR02099 family protein.
  
     0.747
SED73652.1
Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.744
SED29094.1
N-acetylglucosaminyl deacetylase, LmbE family.
  
     0.731
SEC71079.1
Hypothetical protein.
  
     0.730
SED63912.1
Hypothetical protein.
  
     0.713
SED90345.1
Protein of unknown function.
  
     0.700
SEC42140.1
Hypothetical protein.
  
     0.692
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.