Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEE39770.1Hypothetical protein. (100 aa)    
Predicted Functional Partners:
SEE39729.1
PilZ domain-containing protein.
       0.860
SEE39818.1
Glycerophosphoryl diester phosphodiesterase.
       0.805
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
       0.742
SEE21057.1
Hypothetical protein.
  
     0.640
SEC15796.1
Protein of unknown function.
  
     0.599
SEE39596.1
Lipoprotein-releasing system permease protein.
       0.596
SEE39681.1
Lipoprotein-releasing system permease protein.
       0.596
SED21400.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
  
     0.533
SEE16505.1
Protein of unknown function.
  
     0.524
SEC12187.1
Protein of unknown function.
  
     0.514
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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