Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEE75240.1Hypothetical protein. (79 aa)    
Predicted Functional Partners:
SEE75269.1
AAA domain (dynein-related subfamily).
       0.626
SEE75332.1
PLD-like domain-containing protein.
       0.625
SEE75214.1
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain.
       0.610
SEE75183.1
Hypothetical protein.
       0.532
SEE75302.1
Membrane associated serine protease, rhomboid family.
       0.527
SEE75154.1
Phage shock protein A (PspA) family protein.
       0.457
SEE75128.1
Hypothetical protein.
       0.429
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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