STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rocE_1Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)    
Predicted Functional Partners:
paaF_1
enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.530
steT
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.508
ANI13583.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.502
ANI15326.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.459
ANI15758.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.418
acdA_1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.403
Your Current Organism:
Pseudomonas citronellolis
NCBI taxonomy Id: 53408
Other names: ATCC 13674, CCUG 17933, CFBP 5585, CIP 104381, DSM 50332, IAM 15129, JCM 21587, LMG 18378, LMG:18378, NBRC 103043, NRRL B-2504, P. citronellolis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.