STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfeX_3Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)    
Predicted Functional Partners:
efeO_1
Multidrug DMT transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.716
efeO_2
Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.710
lin
Bacteriocin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.672
ANI17030.1
Copper resistance protein CopZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.634
pcoC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.594
efeU_3
Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.511
efeU_1
Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.447
efeU_2
FTR1 family iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.447
ANI18040.1
Thiol-disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.432
ANI15137.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.414
Your Current Organism:
Pseudomonas citronellolis
NCBI taxonomy Id: 53408
Other names: ATCC 13674, CCUG 17933, CFBP 5585, CIP 104381, DSM 50332, IAM 15129, JCM 21587, LMG 18378, LMG:18378, NBRC 103043, NRRL B-2504, P. citronellolis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.