Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lcfB_2AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (556 aa)    
Predicted Functional Partners:
lgrD_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.979
ANI16863.1
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.957
acsA_2
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.831
ureR_3
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.831
ANI14892.1
methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.793
lplT
Glycerol acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.755
menB
Catalyzes the hydration of gamma-carboxygeranoyl-CoA to 3-hydroxy-gamma-carboxygeranoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.676
pctC_3
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.635
lgrD_2
Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.554
tsaC1_3
3-hydroxy-2-methylbutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.531
Your Current Organism:
Pseudomonas citronellolis
NCBI taxonomy Id: 53408
Other names: ATCC 13674, CCUG 17933, CFBP 5585, CIP 104381, DSM 50332, IAM 15129, JCM 21587, LMG 18378, LMG:18378, NBRC 103043, NRRL B-2504, P. citronellolis
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