STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANI18511.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)    
Predicted Functional Partners:
ligD
ATP-dependent DNA ligase; Catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.641
nirK
Nitrite reductase, copper-containing; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase family.
   
 
 0.609
ANI15405.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.609
mco
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.609
ANI15655.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.539
ANI14923.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.437
ykoV
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
    0.434
Your Current Organism:
Pseudomonas citronellolis
NCBI taxonomy Id: 53408
Other names: ATCC 13674, CCUG 17933, CFBP 5585, CIP 104381, DSM 50332, IAM 15129, JCM 21587, LMG 18378, LMG:18378, NBRC 103043, NRRL B-2504, P. citronellolis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.