STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001613405_00325Unannotated protein. (320 aa)    
Predicted Functional Partners:
GCA_001613405_00324
Unannotated protein.
 
  
 0.910
GCA_001613405_02690
Unannotated protein.
  
 0.772
GCA_001613405_00326
Unannotated protein.
       0.736
GCA_001613405_00851
Unannotated protein.
 
  
 0.689
GCA_001613405_00323
Unannotated protein.
       0.675
GCA_001613405_07888
Unannotated protein.
  
 
 0.616
GCA_001613405_00327
Unannotated protein.
       0.602
GCA_001613405_02691
Unannotated protein.
 
 
 0.601
GCA_001613405_02694
Unannotated protein.
    
 0.498
GCA_001613405_00328
Unannotated protein.
       0.406
Your Current Organism:
Nocardia crassostreae
NCBI taxonomy Id: 53428
Other names: ATCC 700418, CIP 105895, DSM 44597, JCM 10500, N. crassostreae, NBRC 100342, strain NB4H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.