STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001613405_02708Unannotated protein. (121 aa)    
Predicted Functional Partners:
GCA_001613405_02709
Unannotated protein.
 
     0.807
GCA_001613405_00844
Unannotated protein.
    
  0.631
GCA_001613405_05796
Unannotated protein.
    
 
 0.611
GCA_001613405_02707
Unannotated protein.
       0.563
GCA_001613405_07554
Unannotated protein.
  
   0.545
GCA_001613405_02710
Unannotated protein.
 
     0.505
GCA_001613405_06617
Unannotated protein.
     
 0.486
GCA_001613405_07404
Unannotated protein.
  
    0.482
GCA_001613405_07565
Unannotated protein.
  
   0.460
GCA_001613405_05735
Unannotated protein.
  
     0.451
Your Current Organism:
Nocardia crassostreae
NCBI taxonomy Id: 53428
Other names: ATCC 700418, CIP 105895, DSM 44597, JCM 10500, N. crassostreae, NBRC 100342, strain NB4H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.