STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001613405_07982Unannotated protein. (231 aa)    
Predicted Functional Partners:
GCA_001613405_05505
Unannotated protein.
  
     0.529
GCA_001613405_07983
Unannotated protein.
       0.527
GCA_001613405_07984
Unannotated protein.
       0.513
GCA_001613405_06450
Unannotated protein.
  
     0.509
GCA_001613405_07774
Unannotated protein.
  
     0.422
GCA_001613405_00201
Unannotated protein.
 
     0.420
GCA_001613405_04154
Unannotated protein.
  
     0.408
GCA_001613405_06486
Unannotated protein.
  
     0.403
Your Current Organism:
Nocardia crassostreae
NCBI taxonomy Id: 53428
Other names: ATCC 700418, CIP 105895, DSM 44597, JCM 10500, N. crassostreae, NBRC 100342, strain NB4H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.