STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM69020.1Rod shape-determining protein MreD. (176 aa)    
Predicted Functional Partners:
CUM69012.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.992
pbpA_1
Penicillin-binding protein A.
 
  
 0.920
minD_1
Cell division inhibitor MinD.
  
  
 0.900
mreB_1
Rod shape-determining protein MreB.
  
  
 0.894
CUM69119.1
Putative membrane fusion protein.
 
     0.780
CUM82689.1
Spore germination protein.
  
     0.763
CUM69000.1
DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.758
CUN12342.1
Predicted methyltransferase (contains TPR repeat).
 
     0.756
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
  
  
 0.750
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
   
 0.726
Your Current Organism:
Blautia hydrogenotrophica
NCBI taxonomy Id: 53443
Other names: B. hydrogenotrophica, DSM 10507, JCM 14656, Ruminococcus hydrogenotrophicus, strain S5a33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.