Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUM75758.1 | fprA1 | ERS852414_00562 | ERS852414_00824 | Uncharacterised protein. | H(2)O-forming NADH oxidase. | 0.514 |
CUM75758.1 | iscR | ERS852414_00562 | ERS852414_00499 | Uncharacterised protein. | HTH-type transcriptional regulator iscR. | 0.565 |
CUM75758.1 | iscS | ERS852414_00562 | ERS852414_03172 | Uncharacterised protein. | Cysteine desulfurase. | 0.978 |
CUM75758.1 | nifS | ERS852414_00562 | ERS852414_00498 | Uncharacterised protein. | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.978 |
CUM75758.1 | ywnA_2 | ERS852414_00562 | ERS852414_00392 | Uncharacterised protein. | Putative HTH-type transcriptional regulator ywnA. | 0.565 |
ctpF | iscR | ERS852414_00495 | ERS852414_00499 | Probable cation-transporting ATPase F. | HTH-type transcriptional regulator iscR. | 0.565 |
ctpF | mnmA | ERS852414_00495 | ERS852414_00496 | Probable cation-transporting ATPase F. | tRNA-specific 2-thiouridylase mnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.701 |
ctpF | nifS | ERS852414_00495 | ERS852414_00498 | Probable cation-transporting ATPase F. | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.652 |
ctpF | nifU | ERS852414_00495 | ERS852414_00497 | Probable cation-transporting ATPase F. | NifU-like protein. | 0.686 |
fprA1 | CUM75758.1 | ERS852414_00824 | ERS852414_00562 | H(2)O-forming NADH oxidase. | Uncharacterised protein. | 0.514 |
fprA1 | iscR | ERS852414_00824 | ERS852414_00499 | H(2)O-forming NADH oxidase. | HTH-type transcriptional regulator iscR. | 0.411 |
fprA1 | iscS | ERS852414_00824 | ERS852414_03172 | H(2)O-forming NADH oxidase. | Cysteine desulfurase. | 0.432 |
fprA1 | nifS | ERS852414_00824 | ERS852414_00498 | H(2)O-forming NADH oxidase. | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.432 |
fprA1 | nifU | ERS852414_00824 | ERS852414_00497 | H(2)O-forming NADH oxidase. | NifU-like protein. | 0.514 |
fprA1 | ywnA_2 | ERS852414_00824 | ERS852414_00392 | H(2)O-forming NADH oxidase. | Putative HTH-type transcriptional regulator ywnA. | 0.411 |
iscR | CUM75758.1 | ERS852414_00499 | ERS852414_00562 | HTH-type transcriptional regulator iscR. | Uncharacterised protein. | 0.565 |
iscR | ctpF | ERS852414_00499 | ERS852414_00495 | HTH-type transcriptional regulator iscR. | Probable cation-transporting ATPase F. | 0.565 |
iscR | fprA1 | ERS852414_00499 | ERS852414_00824 | HTH-type transcriptional regulator iscR. | H(2)O-forming NADH oxidase. | 0.411 |
iscR | iscS | ERS852414_00499 | ERS852414_03172 | HTH-type transcriptional regulator iscR. | Cysteine desulfurase. | 0.773 |
iscR | mnmA | ERS852414_00499 | ERS852414_00496 | HTH-type transcriptional regulator iscR. | tRNA-specific 2-thiouridylase mnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.673 |
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