STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdh_2NAD-dependent methanol dehydrogenase. (388 aa)    
Predicted Functional Partners:
porA_2
Pyruvate synthase subunit porA.
  
 
 0.841
gltD_1
Glutamate synthase [NADPH] small chain.
    
 0.817
nqo1_2
NADH-quinone oxidoreductase subunit 1.
  
 
 0.757
gltD_2
Glutamate synthase [NADPH] small chain.
    
 0.749
nqo1_3
NADH-quinone oxidoreductase subunit 1.
  
 
 0.745
CUN07586.1
Proline racemase; Belongs to the proline racemase family.
       0.737
CUN07572.1
NADH dehydrogenase subunit G.
    
 0.722
accD
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
     
 0.716
trxB_3
Thioredoxin reductase.
     
 0.693
nqo1_1
NADH-quinone oxidoreductase subunit 1.
  
 
 0.689
Your Current Organism:
Blautia hydrogenotrophica
NCBI taxonomy Id: 53443
Other names: B. hydrogenotrophica, DSM 10507, JCM 14656, Ruminococcus hydrogenotrophicus, strain S5a33
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