STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM39242.1Transcriptional regulator, HxlR family. (218 aa)    
Predicted Functional Partners:
SHM39265.1
Uncharacterized conserved protein YbaA, DUF1428 family.
       0.607
SHM39288.1
Hypothetical protein.
  
    0.603
SHM39329.1
Glutathione S-transferase.
       0.591
SHM39312.1
Glutathione S-transferase; Belongs to the GST superfamily.
       0.539
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.416
Your Current Organism:
Paracoccus solventivorans
NCBI taxonomy Id: 53463
Other names: ATCC 700252, CIP 105051, DSM 6637, P. solventivorans, VKM B-2190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.