STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ09174.1Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. (232 aa)    
Predicted Functional Partners:
SEQ09203.1
Hypothetical protein.
 
     0.723
nhaK
Sodium/proton antiporter, CPA1 family.
       0.582
csd
Selenocysteine lyase/Cysteine desulfurase.
   
   0.510
sufS_1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
   
   0.510
sufS_2
Selenocysteine lyase/Cysteine desulfurase.
   
   0.510
SER14567.1
Hypothetical protein.
  
  
 0.475
SEQ76354.1
Transglycosylase SLT domain-containing protein.
  
     0.463
phzF
Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
  
    0.453
SEP90877.1
Hypothetical protein.
  
     0.446
yijE
Uncharacterized membrane protein.
       0.428
Your Current Organism:
Thalassobius gelatinovorus
NCBI taxonomy Id: 53501
Other names: ATCC 25655, Agrobacterium gelatinovorum, CECT 4357, CIP 105976, DSM 5887, IAM 12617, JCM 20688, LMG 129, LMG:129, NBRC 15761, Ruegeria gelatinovora, Ruegeria gelatinovorans, T. gelatinovorus
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.