STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fucARibulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase. (255 aa)    
Predicted Functional Partners:
SEQ89475.1
Ketopantoate reductase.
 
     0.829
siaT_9
TRAP transporter, DctM subunit.
       0.661
siaT_8
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.641
dctP_3
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
       0.638
metH_1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.601
hsaA
Acyl-CoA dehydrogenase.
 
    0.597
mcl1
beta-methylmalyl-CoA/L-malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
   
    0.574
mcl2_2
(3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family.
   
    0.574
mcl2_1
(S)-citramalyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
   
    0.574
antA
Phenylpropionate dioxygenase, large terminal subunit.
 
     0.573
Your Current Organism:
Thalassobius gelatinovorus
NCBI taxonomy Id: 53501
Other names: ATCC 25655, Agrobacterium gelatinovorum, CECT 4357, CIP 105976, DSM 5887, IAM 12617, JCM 20688, LMG 129, LMG:129, NBRC 15761, Ruegeria gelatinovora, Ruegeria gelatinovorans, T. gelatinovorus
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