STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ93921.1Major Facilitator Superfamily protein. (411 aa)    
Predicted Functional Partners:
YaaA
Hypothetical protein; Belongs to the UPF0246 family.
  
    0.862
mepA_1
Putative efflux protein, MATE family.
 
   
 0.846
prmA
[LSU ribosomal protein L11P]-lysine N-methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.749
SEQ93989.1
Hypothetical protein.
       0.520
azr_1
NAD(P)H-dependent FMN reductase.
       0.480
SEP89901.1
Phosphate ABC transporter substrate-binding protein, PhoT family.
  
     0.444
clcA
Chloride channel protein, CIC family.
  
     0.441
SEP69956.1
Protein of unknown function.
 
     0.428
SEQ29544.1
EamA-like transporter family protein.
  
     0.408
Your Current Organism:
Thalassobius gelatinovorus
NCBI taxonomy Id: 53501
Other names: ATCC 25655, Agrobacterium gelatinovorum, CECT 4357, CIP 105976, DSM 5887, IAM 12617, JCM 20688, LMG 129, LMG:129, NBRC 15761, Ruegeria gelatinovora, Ruegeria gelatinovorans, T. gelatinovorus
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