STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allA_2Ureidoglycolate lyase. (193 aa)    
Predicted Functional Partners:
SEQ64511.1
(S)-ureidoglycine aminohydrolase.
 
  
  0.938
allA_1
Ureidoglycolate lyase.
  
  
 
0.924
ureB1
Urease subunit beta; Belongs to the urease beta subunit family.
    
 0.904
ureA
Urease subunit gamma; Belongs to the urease gamma subunit family.
    
  0.902
ureC1
Urease. Metallo peptidase. MEROPS family M38.
    
  0.902
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
    
 0.816
ghrB
Hydroxypyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
  0.800
mcl1
beta-methylmalyl-CoA/L-malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
     
  0.800
eda
2-keto-3-deoxy-phosphogluconate aldolase.
     
  0.800
lutA
Glycolate oxidase iron-sulfur subunit.
     
  0.800
Your Current Organism:
Thalassobius gelatinovorus
NCBI taxonomy Id: 53501
Other names: ATCC 25655, Agrobacterium gelatinovorum, CECT 4357, CIP 105976, DSM 5887, IAM 12617, JCM 20688, LMG 129, LMG:129, NBRC 15761, Ruegeria gelatinovora, Ruegeria gelatinovorans, T. gelatinovorus
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