STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
luxQ_1Signal transduction histidine kinase. (732 aa)    
Predicted Functional Partners:
phoB_2
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.999
barA_2
Signal transduction histidine kinase.
 
 
0.994
barA_1
Histidine kinase.
 
 
0.994
arcB
PAS domain S-box-containing protein.
 
 
0.994
rcsC_3
PAS domain S-box-containing protein.
 
 
0.994
rcsC_2
PAS domain S-box-containing protein.
 
 
0.994
kdpD
PAS/PAC sensor signal transduction histidine kinase.
 
0.994
rcsC_1
Signal transduction histidine kinase.
 
 
0.994
rpfC_2
His Kinase A (phospho-acceptor) domain-containing protein.
 
 
0.993
barA_3
His Kinase A (phospho-acceptor) domain-containing protein.
 
 
0.993
Your Current Organism:
Thalassobius gelatinovorus
NCBI taxonomy Id: 53501
Other names: ATCC 25655, Agrobacterium gelatinovorum, CECT 4357, CIP 105976, DSM 5887, IAM 12617, JCM 20688, LMG 129, LMG:129, NBRC 15761, Ruegeria gelatinovora, Ruegeria gelatinovorans, T. gelatinovorus
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