STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER04973.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
SER05002.1
Uncharacterized membrane protein.
 
     0.942
sigW
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.880
SER04920.1
EF hand.
 
     0.717
SEQ82669.1
Endonuclease/Exonuclease/phosphatase family protein.
  
     0.626
SEQ12473.1
AsmA-like C-terminal region.
  
     0.606
SEQ51534.1
Paraquat-inducible protein A.
  
     0.546
CcmD
Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.501
luxR_1
LuxR family transcriptional regulator.
  
     0.466
SER04892.1
Uncharacterized conserved protein, DUF983 family.
       0.445
SER04863.1
8-oxo-dGTP pyrophosphatase MutT, NUDIX family.
       0.428
Your Current Organism:
Thalassobius gelatinovorus
NCBI taxonomy Id: 53501
Other names: ATCC 25655, Agrobacterium gelatinovorum, CECT 4357, CIP 105976, DSM 5887, IAM 12617, JCM 20688, LMG 129, LMG:129, NBRC 15761, Ruegeria gelatinovora, Ruegeria gelatinovorans, T. gelatinovorus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.