STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER08621.1Transcriptional regulator, TetR family. (209 aa)    
Predicted Functional Partners:
SER08658.1
NitT/TauT family transport system substrate-binding protein.
 
     0.849
SER08599.1
Polysaccharide deacetylase.
 
   
 0.742
budC
3-hydroxybutyrate dehydrogenase.
 
     0.677
ssuC_1
NitT/TauT family transport system permease protein.
 
     0.606
cmpC_3
NitT/TauT family transport system ATP-binding protein.
 
     0.566
fabG_4
3-oxoacyl-[acyl-carrier protein] reductase.
 
     0.565
gbh
Guanidinopropionase; Belongs to the arginase family.
  
    0.490
SEQ15683.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.467
SEQ15718.1
DNA binding domain-containing protein, excisionase family.
  
     0.409
Your Current Organism:
Thalassobius gelatinovorus
NCBI taxonomy Id: 53501
Other names: ATCC 25655, Agrobacterium gelatinovorum, CECT 4357, CIP 105976, DSM 5887, IAM 12617, JCM 20688, LMG 129, LMG:129, NBRC 15761, Ruegeria gelatinovora, Ruegeria gelatinovorans, T. gelatinovorus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.