STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER11473.1Sugar lactone lactonase YvrE. (284 aa)    
Predicted Functional Partners:
SER11498.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
 0.905
SER11440.1
Protein of unknown function DUF115.
 
     0.816
KdsA
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase).
       0.773
SER11553.1
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase).
       0.773
SER11579.1
Arabinose-5-phosphate isomerase.
       0.773
RfbC
dTDP-4-dehydrorhamnose 3,5-epimerase.
       0.623
RfbD
dTDP-4-dehydrorhamnose reductase.
       0.616
SER11416.1
Hypothetical protein.
 
    0.611
RfbA
Glucose-1-phosphate thymidylyltransferase.
       0.608
RfbB
dTDP-glucose 4,6-dehydratase.
       0.595
Your Current Organism:
Thalassobius gelatinovorus
NCBI taxonomy Id: 53501
Other names: ATCC 25655, Agrobacterium gelatinovorum, CECT 4357, CIP 105976, DSM 5887, IAM 12617, JCM 20688, LMG 129, LMG:129, NBRC 15761, Ruegeria gelatinovora, Ruegeria gelatinovorans, T. gelatinovorus
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