STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER11976.1Protein of unknown function. (379 aa)    
Predicted Functional Partners:
SER12006.1
Hypothetical protein.
 
     0.872
SER11897.1
Hypothetical protein.
 
     0.855
hlyA_6
Hemolysin-type calcium-binding repeat-containing protein.
 
     0.820
SER11873.1
Rhamnan synthesis protein F.
 
     0.809
SEQ45827.1
Polysaccharide pyruvyl transferase.
 
     0.763
SEQ74174.1
Methyltransferase, FkbM family.
  
     0.749
SER11946.1
GSCFA family protein.
 
     0.730
SER10745.1
Glycosyl transferases group 1.
 
     0.704
SER11057.1
Putative capsular polysaccharide synthesis protein.
  
     0.700
SER10657.1
Hypothetical protein.
 
     0.654
Your Current Organism:
Thalassobius gelatinovorus
NCBI taxonomy Id: 53501
Other names: ATCC 25655, Agrobacterium gelatinovorum, CECT 4357, CIP 105976, DSM 5887, IAM 12617, JCM 20688, LMG 129, LMG:129, NBRC 15761, Ruegeria gelatinovora, Ruegeria gelatinovorans, T. gelatinovorus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.