STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_000272Pentatricopeptide repeat-containing protein. (259 aa)    
Predicted Functional Partners:
LENED_002573
Gamma-tubulin complex component 5.
    
 0.810
LENED_001538
Tubulin gamma chain; Belongs to the tubulin family.
   
 0.776
LENED_002070
Spindle pole body component.
    
 0.763
LENED_010866
DASH complex subunit ask1.
    
 0.763
LENED_011013
Spindle pole body component.
    
 0.763
LENED_000234
Spindle pole body component.
    
 0.756
LENED_010678
Carboxyl transferase.
    
 0.733
LENED_010677
Carboxyl transferase.
    
 0.733
LENED_010432
Gamma-tubulin complex component 2.
    
 0.704
LENED_010431
Spindle pole body component.
    
 0.704
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.