STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_000319Methyltransf_25 domain-containing protein. (922 aa)    
Predicted Functional Partners:
LENED_002465
Ribosome biogenesis protein tsr1.
   
  0.725
LENED_003174
Trm112p-domain-containing protein.
   
 0.722
LENED_005407
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
    
  0.712
LENED_003385
Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
 0.709
LENED_005296
37s ribosomal protein s5; Belongs to the universal ribosomal protein uS5 family.
    
 0.709
LENED_006514
40S ribosomal protein S27.
    
  0.706
LENED_000946
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.699
LENED_003322
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
  0.699
LENED_005999
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.699
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
    
  0.699
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.