STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_000341Pre-mrna cleavage factor cfi subunit. (572 aa)    
Predicted Functional Partners:
CLP1
mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.
    
 0.994
LENED_005417
Cfia complex component.
    
 0.992
LENED_000430
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.986
LENED_000995
Cleavage stimulation factor subunit 2.
    
 0.985
LENED_002028
Endoribonuclease ysh1.
    
 0.985
LENED_008404
Cleavage and polyadenylation specific protein.
    
 0.985
LENED_001820
Cofactor-independent phosphoglycerate mutase.
    
 0.977
LENED_008551
Pre-mrna polyadenylation factor fip1.
    
 0.971
LENED_009668
Phosphoprotein phosphatase.
   
 
 0.960
LENED_004433
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.958
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.