STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_000410Carbohydrate esterase family 9 protein. (1300 aa)    
Predicted Functional Partners:
LENED_003809
RING U-box.
    
 0.804
LENED_000091
Uncharacterized protein.
   
 0.796
LENED_002931
S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.
   
 0.796
LENED_011845
Uncharacterized protein.
   
 0.796
LENED_007121
Ubiquitin-protein ligase; Belongs to the cullin family.
    
 0.786
LENED_012242
Cullin-domain-containing protein; Belongs to the cullin family.
    
 0.786
LENED_012659
Cullin-domain-containing protein; Belongs to the cullin family.
    
 0.786
LENED_000366
Deoxyribodipyrimidine photo-lyase.
    
 0.756
LENED_002245
Duf1479 domain protein.
    
 0.756
LENED_010615
Uncharacterized protein.
    
 0.744
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.