STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_000656Paired amphipathic helix protein pst1. (1344 aa)    
Predicted Functional Partners:
LENED_006507
Histone deacetylase Hda1.
   
 0.983
LENED_011863
Histone acetyltransferase type B subunit 2.
   
 0.976
LENED_010797
Arginase deacetylase.
   
 0.958
LENED_011389
Histone deacetylase.
   
 0.958
LENED_010173
Chromo domain-containing protein required for cell polarity.
   
 0.955
LENED_006984
Nuclear receptor corepressor 2-like.
    
 0.940
LENED_012231
Uncharacterized protein.
    
 0.940
LENED_009479
Clr6 histone deacetylase associated phd protein-2 cph2.
   
 
 0.934
LENED_009478
Clr6 histone deacetylase associated phd protein-2 cph2.
   
 
 0.934
LENED_003408
Uncharacterized protein.
    
 0.917
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.