STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_001019Zinc finger (CCCH type). (309 aa)    
Predicted Functional Partners:
LENED_010035
Testis-expressed sequence 10 protein.
    
 0.653
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.625
LENED_003803
60s ribosomal protein l2.
    
  0.594
LENED_008426
Actinin-like protein.
    
 0.587
LENED_008305
DUF1348-domain-containing protein.
    
  0.573
LENED_008884
Calmodulin; Belongs to the calmodulin family.
    
  0.573
LENED_008881
Calmodulin; Belongs to the calmodulin family.
    
  0.573
LENED_009409
Myosin regulatory light chain cdc4.
    
  0.573
LENED_002998
Las1-domain-containing protein.
    
  0.572
LENED_007084
Polynucleotide 5-hydroxyl-kinase GRC3.
    
  0.572
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.