STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_001044DUF262 domain-containing protein. (596 aa)    
Predicted Functional Partners:
LENED_011713
MIF4G-domain-containing protein.
    
 0.949
LENED_009042
Pre-mrna-splicing factor cwc25.
   
 0.936
LENED_012628
Pre-mRNA-splicing factor syf2.
    
 0.934
LENED_003483
Small nuclear ribonucleo protein.
    
 0.928
LENED_009501
DUF572-domain-containing protein.
   
 0.927
LENED_006058
Pre-mrna-splicing factor slu7.
    
 0.924
LENED_011323
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.922
LENED_011540
Small nuclear ribonucleoprotein Sm D2.
    
 0.919
LENED_011791
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.917
LENED_007022
Small nuclear ribonucleoprotein Sm D3.
    
  0.914
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.