STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_001748Aldo keto reductase. (339 aa)    
Predicted Functional Partners:
LENED_009072
Potassium voltage-gated channel subfamily B member 2.
    
 0.733
LENED_012550
Methyltransferase type 11.
   
 0.728
LENED_003429
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.724
LENED_002543
Ribosomal protein L37; Binds to the 23S rRNA.
    
  0.698
LENED_002861
Uncharacterized protein.
    
  0.698
LENED_004961
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.689
LENED_006683
Pyridoxamine 5-phosphate oxidase.
     
 0.684
LENED_005490
Pyridoxamine 5-phosphate oxidase-fmn-binding.
     
 0.680
LENED_004779
Antibiotic biosynthesis monooxygenase.
    
 0.624
LENED_009188
Protein transporter SEC13; Belongs to the WD repeat SEC13 family.
    
 0.624
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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