STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_001985Uncharacterized protein. (844 aa)    
Predicted Functional Partners:
LENED_002001
Ubiquitin-domain-containing protein.
    
  0.788
LENED_007306
Ubiquitin C.
    
 0.754
LENED_007305
Polyubiquitin Ubi4.
    
 0.754
LENED_011525
Ubiquitin.
    
 0.754
LENED_007143
Ubiquitin conjugating enzyme family protein.
    
 0.707
LENED_001269
Ubiquitin-conjugating enzyme E2 4.
    
  0.677
LENED_003991
Ubiquitin-conjugating enzyme.
    
  0.677
LENED_003989
Uncharacterized protein.
    
  0.677
LENED_007556
Ubiquitin-conjugating enzyme e2 e2-like.
    
  0.677
LENED_010617
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.677
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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