STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_002652Rad4-domain-containing protein. (781 aa)    
Predicted Functional Partners:
LENED_005550
Uv excision repair protein rad23.
   
 0.961
LENED_005825
Ca2+-binding EF-hand protein.
    
 0.950
LENED_001523
DNA helicase.
   
 0.931
LENED_003096
Ubiquitin family protein.
   
 0.928
LENED_006039
Transcription factor tfiih complex subunit tfb1.
    
 0.915
LENED_006038
BSD domain-containing protein.
    
 0.915
LENED_004077
DNA repair helicase.
    
 0.888
LENED_007272
Ssl1-domain-containing protein.
    
 0.862
LENED_012341
DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.
   
 0.856
LENED_006055
Tfb4-domain-containing protein.
    
 0.844
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.