STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_002720Autophagy-related protein 2. (1938 aa)    
Predicted Functional Partners:
LENED_002155
WD40 repeat-like protein.
    
 0.995
LENED_001050
Other ulk ulk protein kinase.
   
 0.991
LENED_001051
Other ulk ulk protein kinase.
   
 0.991
LENED_010666
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 0.983
LENED_001712
Alpha beta-hydrolase.
    
 
 0.933
LENED_008936
Alpha beta-hydrolase.
    
 
 0.933
LENED_011698
Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.
    
 
 0.717
LENED_003395
Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.
    
 
 0.498
LENED_000997
Phosphoinositide 3-kinase regulatory subunit 4.
   
  
 0.485
LENED_000171
Zz type zinc finger domain-containing protein.
      
 0.480
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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