STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LENED_003578Saccharopine dehydrogenase; Belongs to the spermidine/spermine synthase family. (763 aa)    
Predicted Functional Partners:
LENED_001132
Alpha-aminoadipate reductase Lys1p.
  
 
 0.954
LENED_010619
Saccharopine dehydrogenase [NAD(+), L-lysine-forming]; Belongs to the AlaDH/PNT family.
   
 
 0.941
LENED_011499
Saccharopine dehydrogenase [NAD(+), L-lysine-forming]; Belongs to the AlaDH/PNT family.
   
 
 0.941
LENED_007519
Ornithine decarboxylase.
  
 
 0.939
LENED_001022
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.932
LENED_003393
S-adenosylmethionine decarboxylase.
     
 0.912
LENED_003685
Agmatinase; Belongs to the arginase family.
    
 0.895
LENED_000157
Arginase deacetylase; Belongs to the arginase family.
    
 0.776
LENED_008296
Arginase deacetylase; Belongs to the arginase family.
    
 0.776
LENED_008295
Arginase deacetylase; Belongs to the arginase family.
    
 0.776
Your Current Organism:
Lentinula edodes
NCBI taxonomy Id: 5353
Other names: L. edodes, Lentinus edodes, shiitake mushroom
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